PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013603353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 164aa    MW: 18278 Da    PI: 8.594
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013603353.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.74.2e-43141131100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrrkC+k Cv+apyfpa++p kfa+vhk+FGasnv k+l+ l+e++r+da++slvyeA+ar++dPvyG+vg+i++l++qle+l+++la
  XP_013603353.1  14 PCAGCKLLRRKCVKICVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQVLSENHRSDAVNSLVYEANARVQDPVYGCVGTISSLHRQLETLQTQLA 108
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                      +++e
  XP_013603353.1 109 IAQAE 113
                     99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.93513114IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-4114111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MRQKGHRHGE AVSPCAGCKL LRRKCVKICV FAPYFPAKEP YKFAIVHKIF GASNVNKMLQ  60
VLSENHRSDA VNSLVYEANA RVQDPVYGCV GTISSLHRQL ETLQTQLAIA QAELVHMKTL  120
HHVDTRSSPY MASSITFPAI KDFSSDDNMA FMYDNGAGES LWSC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603353.11e-123PREDICTED: LOB domain-containing protein 3-like
SwissprotQ9SA515e-99LBD3_ARATH; LOB domain-containing protein 3
TrEMBLA0A0D3DWZ51e-123A0A0D3DWZ5_BRAOL; Uncharacterized protein
STRINGBra026716.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16530.11e-100ASYMMETRIC LEAVES 2-like 9